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This issue is still happening.

OPNsense 16.7.7-amd64
FreeBSD 10.3-RELEASE-p11
OpenSSL 1.0.2j 26 Sep 2016

root@vpn:/var/log # ps wwwaux | grep -i flow
root   73815  37.5  0.5 122160 32864  -  Ds   Mon05PM  1796:05.42 /usr/local/bin/python2.7 /usr/local/opnsense/scripts/netflow/flowd_aggregate.py
_flowd 85758   0.2  0.0  12360  2412  -  Ds   Mon05PM    13:34.98 flowd: net (flowd)
root   85525   0.0  0.0  12360  1560  -  Is   Mon05PM     0:00.00 flowd: monitor (flowd)
root   82449   0.0  0.0  18752  2196  0  S+    5:06PM     0:00.00 grep -i flow
root@vpn:/var/log # ls -alh flow*
-rw-------  1 root  wheel    33G Nov  3 17:06 flowd.log
root@vpn:/var/log #

It looks like the crashes are back. I implemented the patch referenced here but I have another 16GB+ flowd.log file. :( No logs in the system log either.

Just giving a +1. flowd_aggregate crashes on my instance after 3~ hours. I just checked and found myself with a 3.6GB flowd.log file. :/ It has filled my disk a few times, so frustrating!